基于网络药理学及分子对接技术分析远志治疗原发性失眠作用机制
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R285;R256.23

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国家自然科学基金项目(82160873,81960837,81260526);新疆维吾尔自治区十三五重点学科(新教函〔2022〕112号)


Analysis of Mechanism of Polygalae Radix in Treating Primary Insomnia Based on Network Pharmacology and Molecular Docking Technology
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    摘要:

    目的:基于网络药理学及分子对接技术分析远志治疗原发性失眠(PI) 的作用机制。方法:通过 Herb、Batman-TCM 数据库筛选远志的化合物,用Swiss Target Prediction、SEA 及Batman-TCM 数据库行主要 活性成分潜在靶点筛选,同时在Gene Cards、NCBI 基因、TTD 数据库筛选疾病相关靶点。将远志的主要活性 成分靶点与疾病靶点输入Venny2.1 行交集处理,筛选两者的共同靶点,运用Cytoscape3.8.0 软件构建“药物- 成分-疾病-靶点”PPI 网络并行拓扑分析。使用RStudio4.0.3 软件行基因本体(GO) 功能富集与京都基因和基 因组百科全书(KEGG) 通路富集分析,使用Discovery Studio 软件将远志主要活性成分与疾病核心靶点进行分 子对接。结果:筛选出远志中含有金丝桃苷、α-菠甾醇、芦丁、槲皮素等9 种主要活性成分,261 个药物潜 在作用靶点,与2 600 个PI 相关疾病靶点取交集后获得87 个共有靶点。拓扑分析筛选到白细胞介素-6(IL-6)、 肿瘤坏死因子(TNF)、人环磷酸腺苷反应元件结合蛋白1(CREB1)、血管内皮生长因子A(VEGFA)、丝裂 原活化蛋白激酶3(MAPK3) 等36 个关键靶点。GO 功能富集分析得到BP 条目1 302 项、MF 相关条目101 项、 CC 相关条目63 项;KEGG 通路富集分析筛选到神经活性配体-受体相互作用、γ-氨基丁酸(GABA)、磷脂酰 肌醇3-激酶/蛋白激酶-B(PI3K-Akt)、环磷酸腺苷(cAMP)、TNF 等79 条信号通路;分子对接显示远志主要 活性成分与疾病核心靶点亲和力均良好。结论:远志能够通过多成分、多靶点、多通路的协同作用影响机体的 神经代谢、氧化应激及炎症反应,从而发挥治疗PI 的作用。

    Abstract:

    Abstract: Objective: To analyze the mechanism of Polygalae Radix in treating primary insomnia(PI) based on network pharmacology and molecular docking technology. Methods:The compounds of Polygalae Radixwere screened through Herb and Batman- TCM databases; potential targets of main active components were screened by Swiss Target Prediction,SEA and Batman-TCM databases,and diseaserelated targets were screened in Gene Cards,NCBI Genes,and TTD databases. The targets of main active components and disease targets of Polygalae Radix were input into Venny 2.1 for intersection processing, and their common targets were screened out,and Cytoscape 3.8.0 software was used to build a“drugcomponent- disease- target” PPI network and the topological data analysis was carried out. RStudio4.0.3 software was used to perform gene ontology(GO) function enrichment analysis;the Kyoto Encyclopedia of Genes and Genomes(KEGG) was used for pathway enrichment analysis; Discovery Studio software was used to perform molecular docking between the main active components of Polygalae Radix and the core targets of the disease. Results: It was found that, in Radix Polygalae, there were nine main active components including Hypericin,α- Spinosterol,rutin and quercetin,261 potential drug targets,and 87 common targets after the intersection with 2 600 PI- related disease targets. A total of 36 core targets, including interleukin- 6(IL- 6), tumor necrosis factor(TNF), cAMP responsive element- binding protein 1 (CREB1), vascular endothelial growth factor A(VEGFA), and mitogen- activated protein kinase 3(MAPK3) were screened by topological data analysis. By the GO function enrichment analysis,1 302 BP entries,101 MF related entries, and 63 CC related entries were obtained. By the KEGG pathway enrichment analysis, 79 signal pathways were screened, including neuroactive ligand- receptor interaction pathway, γ- aminobutyric acid(GABA) pathway, phosphatidylinositol- 3- kinase/protein kinase- B(PI3K- Akt) pathway, cyclic adenosine monophosphate(cAMP) and TNF; molecular docking showed that the main active components of Polygalae Radix had a good affinity with core disease targets. Conclusion:Polygalae Radix can affect the nervous metabolism, oxidative stress and inflammatory reactions of the body through the synergistic effect of multiple components,multiple targets and multiple pathways,thus playing a role in the treatment of PI.

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陈旭,张星平,梁瑞宁,闫德祺,梁政亭.基于网络药理学及分子对接技术分析远志治疗原发性失眠作用机制[J].新中医,2022,54(24):7-14

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  • 在线发布日期: 2023-01-01
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