基于网络药理学与分子对接技术探讨雷公藤致肾上腺功能减退的潜在分子机制
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Exploration of the Potential Molecular Mechanism of Adrenal Insufficiency Induced by Tripterygium wilfordii Based on Network Pharmacology and Molecular Docking Tech⁃ nology
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    摘要:

    目的:基于网络药理学和分子对接技术探讨雷公藤致肾上腺功能减退的毒理机制。方法:通过中 药系统药理数据库及分析平台(TCMSP) 和PharmMapper 收集雷公藤候选核心毒性化合物和主要靶点,在比较 毒理基因组学数据库(CTD) 收集肾上腺功能减退潜在毒性靶点,两者取交集后利用STRING 数据库对雷公藤 肾上腺功能减退的毒性靶点基因进行分析;利用Cytoscape 软件构建蛋白质-蛋白质相互作用(PPI) 网络,用 cytoHubba 插件根据MCC 评分鉴定核心基因。此外,利用DAVID 数据库对雷公藤肾上腺功能减退的毒性靶点 基因进行基因本体(GO) 和京都基因与基因组百科全书(KEGG) 富集分析;通过Auto Dock Vina 1.2.2 对核心 毒性化合物和核心基因进行分子对接验证。结果:共获得8 个雷公藤候选毒性化合物和133 个潜在的肾上腺功 能减退毒性靶点。网络分析结果,川陈皮素、豆甾醇、雷公藤内酯酮、异黄腐酚、雷公藤甲素可能是雷公藤肾 上腺功能减退毒性主要化合物,MCC 评分前10 的肾上腺功能减退毒性基因为CASP3、HSP90AA1、ALB、 SRC、EGFR、ESR1、MAPK1、AR、PGR 及MAPK8。GO 和KEGG 分析显示,雷公藤通过蛋白质水解、蛋白 质自磷酸化、细胞凋亡、蛋白质磷酸化等生物学过程,细胞液、细胞外外泌体、细胞质等细胞组分、类固醇结 合、锌离子结合、肽酶活性等分子功能等引起肾上腺功能减退;通过肿瘤通路、脂质与动脉粥样硬化、MAPK 信号通路、活性氧、受体活化等通路致肾上腺功能减退。分子对接表明雷公藤的2 个核心毒性化合物与3 个核 心毒性靶点高度稳定。结论:雷公藤肾上腺功能减退的毒理作用可能通过雷公藤毒性化合物作用于133 个核心 靶点与107 条信号通路而产生。

    Abstract:

    Abstract: Objective: To explore the toxicological mechanism of adrenal insufficiency induced by Tripterygium wilfordii based on network pharmacology and molecular docking technology. Methods: The candidate core toxic compounds and main targets of Tripterygium wilfordii were collected through Traditional Chinese Medicine Systems Pharmacology Database and Analysis Platform (TCMSP) and PharmMapper, and the potential toxic targets of adrenal insufficiency were collected in Comparative Toxicogenomics Database (CTD). After the intersection of the two,STRING database was used to analyze the toxic target genes of Tripterygium wilfordii-induced adrenal insufficiency. The protein-protein interaction (PPI) network was constructed by using Cytascape software,and the core genes were identified by using the cytoHubba plug- in according to the MCC score. In addition,DAVID database was used to enrich and analyze the gene ontology (GO) and the Kyoto Encyclopedia of Genes and Genomes (KEGG) of the toxic target gene of Tripterygium wilfordii-induced adrenal insufficiency. Molecular docking verification of core toxic compounds and core genes was carried out through Auto Dock Vina 1.2.2. Results : A total of 8 candidate toxic compounds of Tripterygium wilfordii and 133 potential toxic targets of adrenal insufficiency were obtained. The results of network analysis showed that nobiletin, stigmasterol, triptonide, isoxanthohumol and triptolide might be the main compounds of Tripterygium wilfordii- induced adrenal insufficiency toxicity. The top 10 genes of adrenal insufficiency toxicity in MCC score were CASP3, HSP90AA1,ALB,SRC,EGFR,ESR1,MAPK1,AR,PGR and MAPK8. GO and KEGG analysis showed that Tripterygium wilfordii caused adrenal insufficiency through biological processes such as protein hydrolysis, protein self- phosphorylation, apoptosis, protein phosphorylation, cell components such as cell fluid, extracellular secretion, cytoplasm, steroid binding, zinc ion binding, peptidase activity and other molecular functions. Through tumor pathway, lipid and atherosclerosis, MAPK signaling pathway, reactive oxygen species, receptor activation and other pathways, adrenal function is reduced. Molecular docking showed that the two core toxic compounds and three core toxic targets of Tripterygium wilfordii were highly stable. Conclusion: The toxicological effect of Tripterygium wilfordii on adrenal insufficiency may be caused by Tripterygium wilfordii toxic compounds acting on 133 core targets and 107 signal pathways.

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傅甜,熊国良.基于网络药理学与分子对接技术探讨雷公藤致肾上腺功能减退的潜在分子机制[J].新中医,2023,55(11):8-14

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  • 在线发布日期: 2023-06-16
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