基于网络药理学及分子对接探讨落新妇治疗病毒性肺炎作用机制
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R285

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浙江省中医药科技计划重大研究项目(GZY-ZJ-KJ-2300S);杭州市科技发展计划项目(202205B06)


Mechanism of Astilbe Chinensis (Maxim.) Franch. et Savat. in Treating Viral Pneumo⁃ nia Based on Network Pharmacology and Molecular Docking
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    摘要:

    目的:基于网络药理学及分子对接探讨落新妇治疗病毒性肺炎的作用机制。方法:利用Herb、中 国知网(CNKI) 数据库筛选落新妇的有效成分,利用SwissTargetPrediction 检索有效成分作用靶点,利用 GeneCard数据库收集病毒性肺炎相关疾病靶点,并通过韦恩图对有效成分和疾病靶点进行并集,获得落新妇 有效成分治疗病毒性肺炎的潜在作用靶点。绘制活性成分-靶点网络图,利用Cytoscape软件计算活性成分度 值。将落新妇和病毒性肺炎的并集靶点利用String数据库进行PPI分析,并通过Cytoscape软件进行Hub基因分 析,筛选落新妇治疗病毒性肺炎的关键靶点。通过David数据库将并集靶点进行GO功能和KEGG通路富集分 析,利用PPI和Hub基因分析得到炎症信号通路中的关键靶点,并通过分子对接验证活性成分和作用靶点蛋白 之间的分子结合能。结果:筛选出落新妇活性成分17个,有效成分作用靶点476个,落新妇有效成分治疗病毒 性肺炎的潜在治疗靶点441个。GO功能富集显示治疗靶点主要富集于炎症反应、蛋白丝氨酸/苏氨酸/酪氨酸激 酶活性及细胞质膜组成部分等生物功能中。KEGG通路富集分析发现治疗靶点主要富集于Th17细胞分化、T细 胞受体(TCR)、丝裂原活化蛋白激酶(MAPK)、磷脂酰肌醇3激酶(PI3K) /蛋白激酶B(AKT) 等相关炎症 信号通路中。深度挖掘得到落新妇治疗病毒性肺炎的关键核心靶点为Jun 原癌基因Ap-1 转录因子亚单 位(JUN)、细胞周期蛋白D1 (CCDN1)、肿瘤坏死因子(TNF) 等,关键靶点所对应的主要活性成分为槲皮 素、山柰酚、落新妇苷、黄酮。将活性成分小分子与排名前5的作用靶蛋白配体进行分子对接,发现活性成分 和靶点蛋白具有较强的结合力。结论:落新妇可能通过槲皮素、山柰酚、落新妇苷、黄酮等主要活性成分作用 于JUN、CCDN1、TNF、JAK2、EGFR等靶点,调节Th17细胞分化、T细胞受体、MAPK、PI3K/AKT等炎症相 关信号通路,起到治疗病毒性肺炎的作用。

    Abstract:

    Abstract: Objective: To explore the mechanism of Astilbe chinensis (Maxim.) Franch. et Savat. in treating viral pneumonia based on network pharmacology and molecular docking. Methods: The active components of Astilbe chinensis (Maxim.) Franch. et Savat. were screened by using Herb and CNKI databases; the targets of active components were detected by SwissTargetPrediction; the viral pneumonia-related disease targets were collected by GeneCard database,and the active components and disease targets were intersected by Venn diagram to obtain the potential targets of the active components of Astilbe chinensis (Maxim.) Franch. et Savat. in treating viral pneumonia. The active components-targets network diagram was drawn and the active-components degree value was calculated by Cytoscape software. The intersection targets of Astilbe chinensis (Maxim.) Franch. et Savat. and disease targets were analyzed via String database for PPI, and Hub gene analysis was carried out by Cytoscape software to screen the key targets for the mechanism of Astilbe chinensis (Maxim.) Franch. et Savat. in treating viral pneumonia. Intersection targets were analyzed for GO function and KEGG pathway enrichment through David database. The key targets in the inflammatory signaling pathways were identified by PPI and Hub gene analysis. The molecular binding energy between the active components and the protein of targets was verified by molecular docking. Results: A total of 17 active components in Astilbe chinensis (Maxim.) Franch. et Savat.,476 targets of active components and 441 potential therapeutic targets for the treatment of viral pneumonia were selected. GO functional enrichment showed that therapeutic targets were mainly concentrated in the biological functions of inflammation, protein serine/threonine/tyrosine kinase activity and cell plasma membrane components. KEGG signaling pathway analysis showed that therapeutic targets were mainly concentrated in Th17 cell differentiation, T cell receptor (TCR), mitogen-activated protein kinase (MAPK),phosphatidylinositol 3 kinase (PI3K)/protein kinase B (AKT) and other inflammatory signaling pathways. The key core targets of Astilbe chinensis (Maxim.) Franch. et Savat. in treating viral pneumonia were Jun proto-oncogene Ap-1 transcription factor subunit (JUN),cell cyclin D1 (CCDN1),tumor necrosis factor (TNF), etc. The main active components corresponding to the key core targets were quercetin, kaempferol, astilbe, and flavonoids. The small molecules of active components were docked with the protein ligands of top five targets,and it was found that the active components and the targets had a strong binding ability. Conclusion:Astilbe chinensis (Maxim.) Franch. et Savat. may act on JUN, CCDN1, TNF, JAK2, EGFR and other targets through quercetin, kaempferol, astilbe, flavonoids, etc., and regulate Th17 cell differentiation, T cell receptor, MAPK, PI3K/AKT and other inflammatory signaling pathways, thus playing a role in treating viral pneumonia.

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刘霞,蔡婷婷,王楠楠,王昱霁,徐云玲,戴纯辉,朱婉萍.基于网络药理学及分子对接探讨落新妇治疗病毒性肺炎作用机制[J].新中医,2024,56(24):192-200

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  • 在线发布日期: 2024-12-27
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