基于网络药理学、生信分析及分子对接技术探讨复方斑蝥胶囊治疗胃癌作用机制
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Exploration on Mechanism of Compound Banmao Capsules in Treating Gastric Cancer Based on Network Pharmacology,Bioinformatics Analysis and Molecular Docking
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    摘要:

    目的:基于网络药理学、生信分析及分子对接技术探讨复方斑蝥胶囊(CMC) 治疗胃癌(GC) 的 作用机制。方法:利用HERB数据库筛选CMC的11味中药活性成分,结合PubChem、SwissADME数据库进行 筛选和矫正,SwissTargetPrediction数据库获取药物靶点。TCGA数据库获取GC的基因表达谱和临床数据。通过 R语言4.4.1 limma包筛选GC中的差异靶点基因,将药物靶点与GC靶点取交集,并在Cytoscape 3.10.8中构建核 心活性成分-交集靶点网络,筛选核心有效成分。利用蛋白质-蛋白质相互互作(PPI) 运算和cytoHubba功能 分析进一步确定核心靶点基因。基于Metascape数据库对交集靶点基因进行基因本体(GO) 功能和京都基因与 基因组百科全书(KEGG) 通路富集分析。在GEO数据库中验证核心靶点,并进行生存分析。使用AutoDock 4.2.6进行分子对接,并用Discovery studio 4.5展示部分对接结果。结果:CMC共筛选出有效成分539种,不重 复的药物靶点1 259个;GC差异靶点基因3 141个。CMC和GC共有138个交集靶点。通过PPI和cytoHubba分 析共得到14个核心靶基因。GO功能和KEGG通路富集分析显示,这些基因涉及激素代谢过程、突触信号传导 及神经活性配体-受体相互作用、磷脂酰肌醇-蛋白激酶(PI3K-Akt) 信号通路、癌症信号通路等。GEO验证 得到纤溶酶原激活物抑制剂1(SERPINE1)、白细胞介素-8(CXCL8)、血管紧张素转化酶2(ACE2)、细胞色 素P4502C9 (CYP2C9) 4个核心靶点,其中SERPINE1预后生存分析P<0.05,可能是影响GC预后的关键基 因。分子对接结果显示CMC的主要活性成分(檞皮素、山柰酚、异鼠李素、芹菜素) 与上述4个核心靶点结合 活性良好。结论:CMC中的山柰酚、槲皮素、异鼠李素等有效成分能够作用于SERPINE1、CXCL8、ACE2、 CYP2C9等靶点,调控癌症通路、神经活性配体与受体的相互作用、PI3K-Akt等信号通路治疗GC。

    Abstract:

    Abstract: Objective: To explore the mechanism of Compound Banmao Capsules (CMC) in treating gastric cancer (GC) based on network pharmacology,bioinformatics analysis and molecular docking. Methods:The HERB database was used to screen out and correct the 11 active ingredients of CMC in combination with PubChem and SwissADME databases. Using SwissTargetPrediction database, the drug targets were obtained. The gene expression profile and clinical data of GC were obtained from the TCGA database. The differential target genes in GC were screened by R language 4.4.1 limma package,the drug targets and GC targets were intersected,and the core active ingredientintersection target network was established in Cytoscape 3.10.8 to screen the core active ingredients. Protein-protein interaction (PPI) calculation and cytoHubba functional analysis were used to further determine the core target genes. The enrichment analysis of Gene Ontology (GO) function and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway were performed on the intersection target genes based on the Metascape database. The core targets were verified in the GEO database and given the survival analysis. AutoDock 4.2.6 was used for molecular docking, and Discovery studio 4.5 was used to display some of the docking results. Results:A total of 539 active ingredients and 1 259 nonrepetitive drug targets of CMC were screened out; there were 3 141 differential target genes of GC. There were 138 intersection targets between CMC and GC. A total of 14 core target genes were obtained by PPI and cytoHubba analysis. The enrichment analysis of GO function and KEGG pathway showed that these genes were involved in the hormone metabolism,synaptic transmission and neuroactive ligand-receptor interaction,phosphatidylinositol-protein 3-kinase-Akt (PI3K-Akt) signaling pathway,and cancer signaling pathway. Four core targets of plasminogen activator inhibitor 1 (SERPINE1), interleukin-8 (CXCL8), angiotensin converting enzyme 2 (ACE2) and cytochrome P4502C9 (CYP2C9) were verified by GEO. Among them, SERPINE1 survival prognosis analysis P<0.05 may be the key gene affecting the GC prognosis. The results of molecular docking showed that the main active ingredients (quercetin,kaempferol,isorhamnetin,and apigenin) of CMC had good binding activity with above four core targets. Conclusion:The active ingredients such as kaempferol,quercetin,and isorhamnetin in CMC can act on targets of SERPINE1,CXCL8,ACE2,and CYP2C9,and treat GC by regulating the cancer pathways,neuroactive ligands-receptors interaction,PI3K-Akt and other signaling pathways.

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朱亚莉,罗敏,符路娣,高卓维.基于网络药理学、生信分析及分子对接技术探讨复方斑蝥胶囊治疗胃癌作用机制[J].新中医,2025,57(6):109-117

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  • 在线发布日期: 2025-03-26
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