基于网络药理学和分子对接验证壮骨通痹丸治疗膝骨关节炎作用机制
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R285

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福建中医药大学-范世明中医药传承工作室项目(闽中医办〔2023〕8号)


Mechanism of Zhuanggu Tongbi Pills in Treating Knee Osteoarthritis Based on Network Pharmacology and Molecular Docking Verification
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    目的:基于网络药理学方法和分子对接验证壮骨通痹丸治疗膝骨关节炎(KOA) 的潜在治疗靶点 及可能的作用机制。方法: 采用台湾中医药数据库(TCM Database@Taiwan)、中药系统药理学数据 库(TCMSP)、中医药百科全书(ETCM)、中医药成分鉴定与网络药理学系统(TCM Suit) 和本草组 鉴(HERB) 数据库筛选壮骨通痹丸的有效成分,并通过TCMSP和Swiss Target Prediction数据库筛选有效成分 的作用靶点;结合DrugBank、药物基因组学知识库(PharmGKB)、在线人类孟德尔遗传数据系统(OMIM)、 人类疾病相关基因研究的百科全书(DisGeNET)、人类基因数据库(GeneCards)、比较毒理学基因组学数据 库(CTD) 和治疗靶点数据库(TTD) 的疾病相关靶点,通过Cytoscape软件构建“药物-有效成分-靶点”调控 网络并进行蛋白质-蛋白质互作(PPI) 网络构建及拓扑分析,利用网络药理学自动化分析平台(INPUT) 进行 基因本体论(GO) 和京都基因百科全书(KEGG) 富集分析,最后利用AutoDock Vina进行分子对接验证。结 果:共获取到壮骨通痹丸中槲皮素、木犀草素、山柰酚和五味子酯乙等269个有效成分,对应靶基因1 319个, KOA相关靶点8 816个,交集靶点969个;PPI核心网络共包含前列腺素内过氧化物合酶2(PTGS2)、雄激素受 体(AR)、雌激素受体1(ESR1)、一氧化氮合酶2(NOS2)、核受体共激活因子2(NCOA2) 和周期素依赖性 激酶2 (CDK2) 等138个蛋白。GO功能富集分析得到显著富集(P.adjust<0.05) 的3 303个生物过程(BP), 116个细胞组分(CC) 和244个分子功能(MF)。KEGG通路富集分析共得到177条显著富集(P.adjust<0.05) 的通路,主要有脂质和动脉粥样硬化、磷脂酰肌醇3 激酶-蛋白激酶B (PI3K-Akt)、丝裂原活化蛋白激 酶(MAPK) 和晚期糖基化终产物-受体(AGEs-RAGE) 等信号通路。分子对接结果显示槲皮素、山柰酚与 PTGS2、AR和ESR1等关键靶点具有较好的结合能力。结论:壮骨通痹丸治疗KOA主要是通过槲皮素、山柰酚 等多种成分,作用于脂质和动脉粥样硬化通路、PI3K-Akt等多条信号通路上的PTGS2、AR和ESR1等多个靶 点发挥治疗作用。

    Abstract:

    Abstract: Objective: To explore the potential therapeutic targets and mechanisms of Zhuanggu Tongbi Pills in treating knee osteoarthritis (KOA) based on network pharmacology and molecular docking verification. Methods:The active components of Zhuanggu Tongbi Pills were screened using databases such as Taiwan Traditional Chinese Medicine Database (TCM Database@Taiwan), Traditional Chinese Medicine Systems Pharmacology Database and Analysis Platform( TCMSP),Encyclopedia of Traditional Chinese Medicine( ETCM),Traditional Chinese Medicine Identification and Network Pharmacology System (TCM Suit),and A high-throughput experiment- and reference-guided database of traditional Chinese medicine (HERB). The targets of these active components were identified using TCMSP and Swiss Target Prediction databases. Disease-related targets were obtained from DrugBank, Pharmacogenomics Knowledge Base (PharmGKB), Online Mendelian Inheritance in Man (OMIM), DisGeNET, GeneCards, Comparative Toxicogenomics Database (CTD), and Therapeutic Target Database (TTD). A "drug-active component-target" regulatory network was constructed using Cytoscape software, followed by protein-protein interaction (PPI) network construction and topological analysis. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses were performed using the INPUT platform. Molecular docking was conducted using AutoDock Vina for validation. Results:A total of 269 active components,including quercetin,luteolin,kaempferol,and gomisin B, were identified in Zhuanggu Tongbi Pills, corresponding to 1 319 target genes. There were 8 816 KOA-related targets, with 969 overlapping targets. The PPI core network included 138 proteins such as PTGS2, AR, ESR1, NOS2,NCOA2,and CDK2. GO enrichment analysis revealed 3 303 significantly enriched biological processes (BP), 116 cellular components (CC), and 244 molecular functions (MF) (P. adjust<0.05). KEGG pathway analysis identified 177 significantly enriched pathways (P. adjust<0.05), including lipid and atherosclerosis pathways, phosphoinositide 3-kinase-protein kinase B (PI3K-Akt) pathways, mitogen-activated protein kinase (MAPK) pathways, and advanced glycation end products-receptor for advanced glycation end products (AGEs-RAGE) signaling pathways. Molecular docking results showed that quercetin and kaempferol had strong binding affinities with key targets such as PTGS2,AR,and ESR1. Conclusion:Zhuanggu Tongbi Pills in the treatment of KOA primarily through multiple components such as quercetin and kaempferol,acting on targets like PTGS2,AR,and ESR1 across various signaling pathways,including lipid and atherosclerosis and PI3K-Akt pathways.

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邹福贤,范世明,吴昭克,庄至坤,徐福东,蔡建峰,黄秋萍,郭金花.基于网络药理学和分子对接验证壮骨通痹丸治疗膝骨关节炎作用机制[J].新中医,2025,57(9):220-228

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  • 在线发布日期: 2025-05-12
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