基于网络药理学及分子对接技术探讨刺五加改善特发性间质性肺炎作用机制及提取工艺研究
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R285

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辽宁省教育厅高校科研基金(LJKMZ20221323)


Exploration on Mechanism of Acanthopanacis Senticosi Radix et Rhizoma seu Caulis in Improving Idiopathic Interstitial Pneumonia and Its Extraction Process Based on Network Pharmacology and Molecular Docking Technology
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    摘要:

    目的:运用网络药理学及分子对接技术探讨刺五加改善特发性间质性肺炎的作用机制,优选刺五 加的提取工艺。方法:采用HERB本草组鉴数据库筛选刺五加活性成分及其对应的潜在靶点;在GeneCards、 DisGeNET数据库中筛选特发性间质性肺炎相关基因;利用Venny2.1获取活性成分靶点与肺炎靶点的交集;使 用Cytoscape 3.10.1软件对数据进行可视化处理,得到刺五加活性成分-靶点-特发性间质性肺炎网络图;通过 String数据库构建蛋白质-蛋白质相互作用(PPI) 网络,运用DAVID数据库对潜在靶点进行基因本体(GO) 功 能和京都基因与基因组百科全书(KEGG) 通路富集分析;使用AutoDock Tools 1.5.7软件完成分子对接并评估 蛋白结合的稳定性,得到3D结合模型;并参考《中华人民共和国药典》确定指标成分。运用正交实验设计, 以乙醇倍量、乙醇浓度、提取时间、提取次数为影响因素,以指标综合评分和出膏率为评价指标,确定刺五加 最佳提取工艺。结果:筛选出427 个潜在作用靶点,与2 023 个特发性间质性肺炎相关靶点取交集,得到 185 个共同作用靶点。GO功能富集分析显示刺五加改善特发性间质性肺炎调控的生物过程主要集中在蛋白激 酶B信号传导的正调控、MAP激酶活性的正调控、蛋白质丝氨酸/苏氨酸/酪氨酸激酶活性、蛋白酪氨酸激酶活 性调控上。KEGG信号通路富集分析提示刺五加参与调控PI3K-Akt信号通路、Ras信号通路、MAPK信号通路、 HIF-1信号通路、Rap1信号通路等多条通路。通过蛋白互作分析得到5个核心基因,分别为AKT1、GAPDH、 SRC、EGFR、STAT3,分子对接进一步验证了刺五加主要有效活性成分(刺五加苷B,刺五加苷E,异嗪皮啶, 芝麻素) 与以上5个核心基因的结合稳定性。确定指标成分为刺五加苷B、芝麻素、异嗪皮啶,最佳提取工艺 为加8倍量 60% 乙醇提取2次,每次180 min。结论:刺五加活性成分可能主要通过作用于AKT1、GAPDH、 SRC、EGFR、STAT3基因调控机体细胞周期蛋白和激酶的表达水平,或抑制炎症因子的产生和释放,从而发 挥改善间质性肺炎作用。通过网络药理学及分子对接技术,确定工艺评价指标,优选的刺五加提取工艺合理、 稳定、重复性良好,为后续深入研究提供参考。

    Abstract:

    Abstract: Objective: To explore the mechanism of Acanthopanacis Senticosi Radix et Rhizoma seu Caulis in improving idiopathic interstitial pneumonia by network pharmacology and molecular docking technology, and to optimize the extraction process of Acanthopanacis Senticosi Radix et Rhizoma seu Caulis. Methods:Active components of Acanthopanacis Senticosi Radix et Rhizoma seu Caulis and their corresponding potential targets were screened using the HERB database. Genes related to idiopathic interstitial pneumonia were screened from the GeneCards and DisGeNET databases. Venny2.1 was used to obtain the intersection of active component targets and idiopathic interstitial pneumonia targets. Cytoscape 3.10.1 software was used for data visualization to obtain the active component-targetidiopathic interstitial pneumonia network diagram of Acanthopanacis Senticosi Radix et Rhizoma seu Caulis. The String database was used to construct a protein-protein interaction (PPI) network, and the DAVID database was used for Gene Ontology (GO) function and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis of potential targets. AutoDock Tools 1.5.7 software was used for molecular docking and to evaluate the stability of protein binding,resulting in 3D binding models. Reference was made to the Pharmacopoeia of the People's Republic of China to determine the indicator components. An orthogonal experimental design was used, with ethanol multiple, ethanol concentration, time of extraction, and extraction times as influencing factors, and comprehensive score and extract yield as evaluation indicators, to determine the optimal extraction process of Acanthopanacis Senticosi Radix et Rhizoma seu Caulis. Results:A total of 427 potential targets were screened,and 185 common targets were obtained by intersecting with 2 023 idiopathic interstitial pneumonia-related targets. GO function enrichment analysis showed that the biological processes regulated by Acanthopanacis Senticosi Radix et Rhizoma seu Caulis in improving idiopathic interstitial pneumonia mainly focused on the positive regulation of protein kinase B signaling, positive regulation of MAP kinase activity, protein serine/threonine/tyrosine kinase activity, and regulation of protein tyrosine kinase activity. KEGG pathway enrichment analysis indicated that Acanthopanacis Senticosi Radix et Rhizoma seu Caulis is involved in regulating multiple pathways,including the PI3K-Akt signaling pathway,Ras signaling pathway,MAPK signaling pathway,HIF-1 signaling pathway,and Rap1 signaling pathway. Protein interaction analysis identified five core genes:AKT1,GAPDH,SRC,EGFR,and STAT3. Molecular docking further verified the binding stability of the main active components of Acanthopanacis Senticosi Radix et Rhizoma seu Caulis (eleutheroside B,eleutheroside E,isofraxidin,and sesamin) with these five core genes. The indicator components were determined to be eleutheroside B, sesamin, and isofraxidin. The optimal extraction process was determined to be extraction with eight times the amount of 60% ethanol, twice, each time for 180 minutes. Conclusion: The active components of Acanthopanacis Senticosi Radix et Rhizoma seu Caulis can mainly improve idiopathic interstitial pneumonia by acting on the AKT1, GAPDH,SRC,EGFR,and STAT3 genes to regulate the expression levels of cell cycle proteins and kinases or inhibit the production and release of inflammatory factors. The extraction process optimized through network pharmacology and molecular docking technology is reasonable,stable,and reproducible,providing a reference for subsequent in-depth research.

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孙云峰,赵妍.基于网络药理学及分子对接技术探讨刺五加改善特发性间质性肺炎作用机制及提取工艺研究[J].新中医,2025,57(15):228-238

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  • 在线发布日期: 2025-08-11
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