基于网络药理学和分子对接技术分析脱敏汤治疗变应性鼻炎作用机制
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R285

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浙江省中医药管理局项目(2023ZF138)


Analysis of Mechanism of Tuomin Decoction in Treating Allergic Rhinitis Based on Network Pharmacology and Molecular Docking Technology
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    摘要:

    目的:通过网络药理学和分子对接技术分析脱敏汤治疗变应性鼻炎(AR) 的主要活性成分及潜在 作用机制。方法:运用中药系统药理学数据库与分析平台(TCMSP) 收集脱敏汤各中药的活性成分及其蛋白作 用靶点,通过UniProt数据库转化为基因靶点;在GeneCards、OMIM数据库中获取AR的相关靶点;得到脱敏汤 与AR的交集基因,利用Cytoscape软件进行药物-成分-靶点网络构建及分析,筛选核心靶点及主要活性成分;通 过STRING数据库得到蛋白相互作用(PPI) 网络,用Cytoscape软件绘制并进行网络拓扑学分析;运用DAVID数 据库对交集靶点进行基因本体(GO) 生物功能分析及京都基因与基因组百科全书(KEGG) 通路富集分析,筛选 出具有显著性差异的的生物学过程及信号通路,并构建靶点-信号通路网络;最后通过AutoDockTools软件,对重 要的化学成分和靶点分子进行分子对接。结果:获得脱敏汤有效成分41个,涉及作用靶点98个,AR靶点2 371个, 两者交集靶点47个。槲皮素、木犀草素、β-谷甾醇、去氢-α-拉杷醌、刺槐素为治疗AR排名前5的主要活性化 合物,白细胞介素-6(IL-6)、B淋巴细胞瘤-2(BCL-2)、半胱氨酰天冬氨酸特异性蛋白酶-3(CASP-3) 等是 其关键靶点。GO富集结果表明脱敏汤治疗AR生物学过程主要富集在上皮细胞增殖、源自细菌分子的反应、对 缺氧的反应;核膜、膜筏、膜微区、囊泡腔是其重要的细胞组分;分子功能主要是关于DNA结合转录因子结合、 RNA聚合酶Ⅱ特异性DNA结合转录因子结合、泛素蛋白连接酶结合、泛素样蛋白连接酶结合。KEGG通路富集 分析显示,糖尿病并发症晚期糖基化终末产物及其受体(AGE-RAGE) 信号通路、缺氧诱导因子1(HIF-1α) 信号通路、磷脂酰肌醇3激酶-蛋白激酶B(PI3K-AKT) 信号通路是其关键通路。进一步的分子对接结果提示, 脱敏汤中活性成分槲皮素、木犀草素与关键靶点IL-6、BCL-2有很强的结合能力。结论:脱敏汤治疗AR可能通 过槲皮素、木犀草素等活性成分作用于IL-6、BCL-2等靶点,通过AGE-RAGE、HIF-1α 信号通路、PI3K-AKT 信号通路等通路抑制炎症反应、抗氧化应激、调控细胞增殖和凋亡。

    Abstract:

    Abstract:Objective:To analyze the main active components and potential mechanisms of Tuomin Decoction in treating allergic rhinitis(AR)using network pharmacology and molecular docking technology. Methods: The active components and protein targets of each herb in Tuomin Decoction were collected using the Traditional Chinese Medicine Systems Pharmacology Database and Analysis Platform (TCMSP) and converted into gene targets via the UniProt database. AR-related targets were obtained from the GeneCards and OMIM databases. The intersection genes between Tuomin Decoction and AR were identified,and a drug-component-target network was constructed and analyzed using Cytoscape software to screen core targets and active components. Protein-protein interaction(PPI) networks were obtained from the STRING database and Cytoscape software for drawing and conducting network topology analysis. Gene Ontology(GO)and Kyoto Encyclopedia of Genes and Genomes(KEGG)analyses were performed on the intersection targets using the DAVID database to identify significant biological processes and signaling pathways, and a targetsignaling pathway network was constructed. Molecular docking of key chemical components and target molecules was conducted using AutoDockTools software. Results: A total of 41 active components of Tuomin Decoction were identified,involving 98 targets,with 2 371 AR targets and 47 intersection targets. Quercetin,luteolin,β-sitosterol, xyloidone,and acacetin were the top five active compounds for treating AR. Key targets included interleukin-6(IL-6), B-cell lymphoma-2(BCL-2),and cysteine-aspartic acid protease-3(CASP-3). GO enrichment analysis showed that the biological processes of Tuomin Decoction in treating AR were mainly focused on epithelial cell proliferation, response to bacterial-derived molecules,and response to hypoxia. The nuclear membrane,membrane rafts,membrane microdomains, and vesicle lumen were identified as key cellular components. Molecular functions primarily involved DNA-binding transcription factor binding, RNA polymerase 2-specific DNA-binding transcription factor binding, ubiquitin protein ligase binding, and ubiquitin-like protein ligase binding. KEGG pathway analysis highlighted the advanced glycation end products-receptor for advanced glycation end products (AGE-RAGE) signaling pathway, hypoxia-inducible factor-1α(HIF-1α)signaling pathway, and phosphoinositide 3-kinase-protein kinase B(PI3KAKT) signaling pathway as key pathways. Molecular docking results indicated that the active components quercetin and luteolin in Tuomin Decoction have strong binding affinity for key targets IL-6 and BCL-2. Conclusion: Tuomin Decoction may treat AR by acting on targets such as IL-6 and BCL-2 through active components like quercetin and luteolin, and by regulating pathways such as AGE-RAGE, HIF-1α, and PI3K-AKT to inhibit inflammatory responses,reduce oxidative stress,and modulate cell proliferation and apoptosis.

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郑如伊,聂奥,戴程炜,陈志凌,严道南,颜千钧,吴佳妮.基于网络药理学和分子对接技术分析脱敏汤治疗变应性鼻炎作用机制[J].新中医,2025,57(19):203-211

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