基于网络药理学、分子对接和分子动力学分析活血化瘀方治疗膝骨关节炎作用机制
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R274.9;R285

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广州中医药大学第一附属医院中青年骨干人才培育项目(2023QY13)


Analysis of Action Mechanism of Huoxue Huayu Prescription in Treating Knee Osteoarthritis Based on Network Pharmacology, Molecular Docking, and Molecular Dynamics
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    摘要:

    目的:通过网络药理学、分子对接技术和分子动力学模拟技术分析活血化瘀方治疗膝骨关节 炎(KOA) 的作用机制。方法: 通过中药系统药理学数据库及分析平台(TCMSP)、通用蛋白质数据 库(Uniprot) 和中医药分子机制生物信息学分析工具(Batman) 筛选收集活血化瘀方的活性成分及作用靶点; 从基因卡片数据库(GeneCards)、在线孟德尔遗传数据库(OMIM)、治疗靶点数据库(TTD)、疾病基因网络 数据库(Disgenet) 获取KOA相关靶点,使用R 4.4.2软件绘制韦恩图,运用Cytoscape 3.8.2软件构建“药物-活 性成分-靶点-疾病”网络图,于STRING 数据库构建蛋白质互作(PPI) 网络;应用R4.4.2软件进行基因本 体(GO) 功能和京都基因与基因组百科全书(KEGG) 通路富集分析;运用AutoDock Vina软件将重要靶点和 有效成分进行分子对接,并使用Gromacs2022.3软件进行分子动力学模拟。结果:筛选出活血化瘀方的活性成 分786个,活性成分与疾病相关的交集靶点674个。筛选出槲皮素、木犀草素、黄芩素等主要活性成分及丝裂 原活化蛋白激酶(MAPK) 3、MAPK8、白细胞介素(IL) -6、肿瘤坏死因子(TNF) 等主要核心靶点。GO富 集分析显示活血化瘀方治疗KOA的关键基因功能为脂多糖应答、凋亡信号通路调控和白细胞迁移等。KEGG通 路富集分析显示关键信号通路为TNF、磷脂酰肌醇3激酶-蛋白激酶B (PI3K-Akt)、IL-17及缺氧诱导因子 -1(HIF-1) 信号通路。分子对接结果显示核心靶点与有效成分的良好构效关系,分子动力学模拟进一步验证 了木犀草素与TNF能稳定结合。结论:活血化瘀方可能通过槲皮素、木犀草素和黄芩素等活性成分,作用于 MAPK3、MAPK8、IL-6、TNF等作用靶点,调控TNF、PI3K-Akt、IL-17及HIF-1等信号通路,发挥抑制炎症 反应、抗氧化等作用,延缓KOA疾病进展。

    Abstract:

    Abstract: Objective: To analyze the action mechanism of Huoxue Huayu Prescription in treating knee osteoarthritis (KOA) based on network pharmacology, molecular docking, and molecular dynamics simulation. Methods: Active components and targets of Huoxue Huayu Prescription were collected from the Traditional Chinese Medicine Systems Pharmacology Database and Analysis Platform (TCMSP), Universal Protein Database (UniProt), and Bioinformatics Analysis Tool for Molecular mechANism of Traditional Chinese Medicine (BATMAN-TCM). KOArelated targets were obtained from GeneCards, Online Mendelian Inheritance in Man (OMIM), Therapeutic Target Database( TTD),and DisGeNET. R 4.4.2 software was used to draw Venn diagrams,and Cytoscape 3.8.2 software was used to construct a "medicine-active component-target-disease" network. Protein-protein interaction (PPI) networks were built using the STRING database. Gene Ontology (GO) functional enrichment and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses were performed using R 4.4.2 software. Molecular docking of key targets and active components was conducted using AutoDock Vina software,and molecular dynamics simulations were performed using Gromacs 2022.3 software. Results: A total of 786 active components of Huoxue Huayu Prescription were screened, with 674 intersection targets related to the disease. Major active components such as quercetin, luteolin, and baicalin, as well as core targets including mitogen-activated protein kinase (MAPK) 3, MAPK8, interleukin (IL)-6,and tumor necrosis factor (TNF),were identified. GO enrichment analysis revealed that the key gene functions of Huoxue Huayu Prescription in treating KOA included response to lipopolysaccharide, regulation of apoptotic signaling pathways, and leukocyte migration. KEGG pathway enrichment analysis indicated that the key signaling pathways were TNF,phosphatidylinositol 3-kinase and protein kinase B( PI3K-Akt),IL-17,and hypoxiainducible factor-1 (HIF-1) signaling pathways. Molecular docking results demonstrated good structure-activity relationships between core targets and active components, and molecular dynamics simulations further confirmed the stable binding of luteolin to TNF. Conclusion:Huoxue Huayu Prescription can act through active components such as quercetin,luteolin,and baicalin,targeting MAPK3,MAPK8,IL-6,and TNF,and regulating the TNF,PI3KAkt, IL-17, and HIF-1 signaling pathways to inhibit inflammatory responses, exert antioxidant effects, and delay the progression of KOA.

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石婷,石宇雄,练文兴,余翔,周本根.基于网络药理学、分子对接和分子动力学分析活血化瘀方治疗膝骨关节炎作用机制[J].新中医,2026,58(1):159-167

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  • 在线发布日期: 2026-01-12
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